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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs4788196 1 rs4788196 chr16:29967434 RUNDC2C chr16:29339874-29418349:+ 0.15 3.5 0.000502 Pubertal anthropometrics
THCA cis rs4788196 1 rs4788196 chr16:29967434 TBX6 chr16:30097117-30103208:- 0.19 4.56 6.38E-6 Pubertal anthropometrics
THCA cis rs4788815 1 rs4788815 chr16:71634811 MARVELD3 chr16:71660070-71675866:+ -0.15 -3.35 0.000877 Metabolite levels
THCA cis rs683250 1 rs478946 chr11:83297563 CCDC90B chr11:82972506-82997414:- 0.16 3.87 0.000124 Subcortical brain region volumes
THCA cis rs4789693 1 rs4789693 chr17:80421870 NARF chr17:80416060-80446141:+ -0.15 -3.74 0.000203 Glucocorticoid-induced osteonecrosis
THCA cis rs4790881 1 rs4790881 chr17:2068932 SRR chr17:2207248-2228553:+ -0.39 -6.72 5.07E-11 Bone mineral density
THCA cis rs7216064 1 rs4790908 chr17:65852907 C17orf58 chr17:65987218-65989765:- 0.24 4.84 1.75E-6 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs7216064 1 rs4791212 chr17:65975385 C17orf58 chr17:65987218-65989765:- 0.2 3.91 0.000105 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs7216064 1 rs4791299 chr17:65930937 C17orf58 chr17:65987218-65989765:- 0.24 4.84 1.76E-6 Lung adenocarcinoma;Lung cancer;EGFR mutation-positive lung adenocarcinoma
THCA cis rs4791641 1 rs4791641 chr17:8161149 C17orf44 chr17:8123949-8127361:- 0.17 3.45 0.000604 LDL cholesterol
THCA cis rs4791641 1 rs4791641 chr17:8161149 PFAS chr17:8152596-8173808:+ -0.21 -5.66 2.68E-8 LDL cholesterol
THCA cis rs8077889 1 rs4793035 chr17:41887753 MPP3 chr17:41878169-41910538:- 0.29 4.77 2.44E-6 Triglycerides
THCA cis rs465969 1 rs479343 chr6:111690904 KIAA1919 chr6:111580482-111590259:+ 0.48 5.6 3.62E-8 Psoriasis
THCA cis rs8072100 1 rs4794016 chr17:45725931 TBKBP1 chr17:45772630-45789427:+ 0.36 10.23 2.48E-22 Very long-chain saturated fatty acid levels (fatty acid 20:0)
THCA cis rs8072100 1 rs4794048 chr17:45763073 TBKBP1 chr17:45772630-45789427:+ -0.4 -11.17 6.45E-26 Very long-chain saturated fatty acid levels (fatty acid 20:0)